PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco007447.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family LSD
Protein Properties Length: 163aa    MW: 17923.8 Da    PI: 9.7751
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco007447.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD139.41e-123356124
      zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdt 24
                 CggCrtlL Y+rGA +VRC+ C+ 
  Aco007447.1 33 CGGCRTLLIYTRGAENVRCSRCNL 56
                 **********************96 PP

2zf-LSD140.64.1e-137195125
      zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                 Cg Cr +L+YP+GA+ V+Ca+C+++
  Aco007447.1 71 CGRCRRILMYPYGASTVKCAVCHHI 95
                 ***********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.1E-133058IPR005735Zinc finger, LSD1-type
PfamPF069431.8E-113356IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010537.5E-126898IPR005735Zinc finger, LSD1-type
PfamPF069431.5E-127195IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MQHDNLYFPL RVLSYNFKEY IKFTGTEMAQ LVCGGCRTLL IYTRGAENVR CSRCNLINSS  60
TTASRVAHVT CGRCRRILMY PYGASTVKCA VCHHITNVGM NNNSRLPLPS WRPNASTPLP  120
TPVNVAPSNS MRQTVIVENP MSVDENGKLV SNVVVGVTTK KT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007212162.11e-55hypothetical protein PRUPE_ppa012421mg
RefseqXP_007212163.11e-55hypothetical protein PRUPE_ppa012421mg
SwissprotQ6ASS22e-46LOL3_ORYSJ; Protein LOL3
TrEMBLM5WHS32e-55M5WHS3_PRUPE; Uncharacterized protein
STRINGEFJ357571e-49(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134738124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.77e-46LSD family protein